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PUBLICATIONS: 2000-2008
[2000-2008] | [1990-1999] | [1979-1989] | [Book
Chapters]
Lukatsky DB, Shakhnovich EI
Statistically enhanced promiscuity of structurally correlated
patterns
PHYSICAL REVIEW E 77 (2) 020901 2008
de Araujo AFP, Gomes ALC, Bursztyn AA, Shakhnovich, EI
Native atomic burials, supplemented by physically motivated
hydrogen bond constraints, contain sufficient information to determine the
tertiary structure of small globular proteins
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 70 (3):
971-983 FEB 15 2008
Yang JS, Wallin S, Shakhnovich EI
Universality and diversity of folding mechanics for
three-helix bundle proteins
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 105 (3): 895-900 JAN 22
2008
Zeldovich KB, Chen PQ, Shakhnovich EI
Protein stability imposes limits on organism complexity and
speed of molecular evolution
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 104 (41): 16152-16157 OCT 9
2007
Deeds EJ, Ashenberg O, Gerardin J, Shakhnovich EI
Robust protein-protein interactions in crowded cellular
environments
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 104 (38): 14952-14957 SEP
18 2007
Zeldovich KB, Chen PQ, Shakhnovich BE, Shakhnovich EI
A first-principles model of early evolution: Emergence of
gene families, species, and preferred protein folds
PLOS COMPUTATIONAL BIOLOGY 3 (7): 1224-1238
JUL 2007
Perlstein EO, Deeds EJ, Ashenberg O, Shakhnovich EI, Schreiber SL
Quantifying fitness distributions and phenotypic
relationships in recombinant yeast populations
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 104 (25): 10553-10558 JUN
19 2007
Tannenbaum E, Shakhnovich EI
Semi conservative replication, genetic repair, and many-gened
genomes: Extending the quasispecies paradigm to living systems
PHYSICS OF LIFE REVIEWS 2 (4): 290-317
DEC 2005
Zeldovich K, Shakhnovich B, Shakhnovich EI
How protein physics shapes biological evolution
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 24
(6): 751-751 Meeting Abstract JUN 2007
Berezovsky IN, Zeldovich KB, Shakhnovich EI
Positive and negative design in stability and thermal
adaptation of natural proteins
PLOS COMPUTATIONAL BIOLOGY 3 (3): 498-507
MAR 2007
Wallin S, Zeldovich KB, Shakhnovich EI
The folding mechanics of a knotted protein
JOURNAL OF MOLECULAR BIOLOGY 368 (3):
884-893 MAY 4 2007
Donald JE, Chen WW, Shakhnovich EI
Energetics of protein-DNA interactions
NUCLEIC ACIDS RESEARCH 35 (4): 1039-1047
FEB 2007
Yang JS, Chen WW, Skolnick J, Shakhnovich EI
All-atom ab initio folding of a diverse set of proteins
STRUCTURE 15 (1): 53-63 JAN
2007
Nivon LG, Shakhnovich EI
Kinetic folding pathway of the hairpin ribozyme from all-atom
simulation: Salt-dependence and transition state ensemble
BIOPHYSICAL JOURNAL 351A-351A Supplement: Suppl. S
JAN 2007
Zeldovich KB, Berezovsky IN, Shakhnovich EI
Protein and DNA sequence determinants of thermophilic
adaptation
PLOS COMPUTATIONAL BIOLOGY 3 (1): 62-72
JAN 2007
Lukatsky DB, Shakhnovich BE, Mintseris J, Shakhnovich EI
Structural similarity enhances interaction propensity of
proteins
JOURNAL OF MOLECULAR BIOLOGY 365 (5):
1596-1606 FEB 2 2007
Chen WW, Yang JS, Shakhnovich EI
A knowledge-based move set for protein folding
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 66
(3): 682-688 FEB 15 2007
Gomes ALC, de Rezende JR, de Araujo AFP, Shakhnovich EI
Description of atomic burials in compact globular proteins by
fermi-dirac probability distributions
Source: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 66
(2): 304-320 FEB 1 2007
Hubner IA, Deeds EJ, Shakhnovich EI
Understanding ensemble protein folding at atomic detail
Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED
STATES OF AMERICA 103 (47): 17747-17752
NOV 21 2006
Lukatsky DB, Zeldovich KB, Shakhnovich EI
Statistically enhanced self-attraction of random patterns
PHYSICAL REVIEW LETTERS 97 (17)
178101 OCT 27 2006
Tannenbaum E, Sherley JL, Shakhnovich EI
Semiconservative quasispecies equations for polysomic
genomes: The haploid case
JOURNAL OF THEORETICAL BIOLOGY 241 (4):
791-805 AUG 21 2006
Brumer Y, Michor F, Shakhnovich EI
Genetic instability and the quasispecies model
JOURNAL OF THEORETICAL BIOLOGY 241 (2):
216-222 JUL 21 2006
Hubner IA, Lindberg M, Haglund E, Shakhnovich EI, Oliveberg M
Common motifs and topological effects in the protein folding
transition state
JOURNAL OF MOLECULAR BIOLOGY 359 (4):
1075-1085 JUN 16 2006
Shakhnovich EI
Physics and evolution of protein-protein interactions
Source: FASEB JOURNAL 20 (5): A1473-A1473 Part:
Part 2 MAR 7 2006
Lindberg MO, Haglund E, Hubner IA, Shakhnovich EI, Oliveberg M
Identification of the minimal protein-folding nucleus through
loop-entropy perturbations
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 103 (11): 4083-4088 MAR 14
2006
Zeldovich KB, Berezovsky IN, Shakhnovich EI
Physical origins of protein superfamilies
JOURNAL OF MOLECULAR BIOLOGY 357 (4):
1335-1343 APR 7 2006
Oliveberg M, Shakhnovich EI
Folding and binding - The conformational repertoire of
proteins: folding, aggregation and structural recognition
CURRENT OPINION IN STRUCTURAL BIOLOGY 16 (1): 68-70 FEB 2006
Zhang Y, Hubner IA, Arakaki AK, Shakhnovich E, Skolnick J
On the origin and highly likely completeness of single-domain protein
structures
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA 103 (8): 2605-2610 FEB 21 2006
von Grotthuss M, Plewczynski D, Ginalski K, Rychlewski L, Shakhnovich, EI
PDB-UF:
database of predicted enzymatic functions for unannotated protein structures from structural genomics
BMC BIOINFORMATICS 2006, 7 (1): 53 FEB 6 2006 [pdf]
Deeds EJ, Ashenberg O, Shakhnovich EI
A simple physical model for scaling in protein-protein interaction
networks
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA 103 (2): 311-316 JAN 10 2006
Berezovsky IN, Chen WW, Choi PJ, Shakhnovich EI
Entropic stabilization of proteins and its proteomic consequences
PLOS COMPUTATIONAL BIOLOGY 1 (4): 322-332 SEP 2005
Hubner IA, Deeds EJ, Shakhnovich EI
High-resolution protein folding with a transferable potential
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA 102 (52): 18914-18919 DEC 27 2005
Berezovsky IN, Shakhnovich EI
Physics and evolution of thermophilic adaptation
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA 102 (36): 12742-12747 SEP 6 2005
Hubner IA, Shakhnovich EI
Geometric and physical considerations for realistic protein models
PHYSICAL REVIEW E 72 (2): Art. No. 022901 Part 1 AUG 2005
Donald JE, Shakhnovich EI
Predicting specificity-determining residues in two large eukaryotic
transcription factor families
NUCLEIC ACIDS RESEARCH 33 (14): 4455-4465 2005
Ding F, Guo WH, Dokholyan NV, Shakhnovich EI, Shea JE
Reconstruction of the src-SH3 protein domain transition state ensemble
using multiscale molecular dynamics simulations
JOURNAL OF MOLECULAR BIOLOGY 350 (5): 1035-1050 JUL 29 2005
Chen WW, Shakhnovich EI
Lessons from the design of a novel atomic potential for protein folding
PROTEIN SCIENCE 14 (7): 1741-1752 JUL 2005
Deeds EJ, Shakhnovich EI
The emergence of scaling in sequence-based physical models of protein
evolution
BIOPHYSICAL JOURNAL 88 (6): 3905-3911 JUN 2005
Hubner IA, Edmonds KA, Shakhnovich EI
Nucleation and the transition state of the SH3 domain
JOURNAL OF MOLECULAR BIOLOGY 349 (2): 424-434 JUN 3 2005
Donald JE, Hubner IA, Rotemberg VM, Shakhnovich EI, Mirny LA
CoC: a database of universally conserved residues in protein folds
BIOINFORMATICS 21 (10): 2539-2540 MAY 15 2005
Donald JE, Shakhnovich EI
Determining functional specificity from protein sequences
BIOINFORMATICS 21 (11): 2629-2635 JUN 1 2005
Brumer Y, Shakhnovich EI
Selective advantage for conservative viruses
PHYSICAL REVIEW E 71 (3): Art. No. 031903 Part 1 MAR 2005
Tannenbaum E, Sherley JL, Shakhnovich EI
Evolutionary dynamics of adult stem cells: Comparison of random and
immortal-strand segregation mechanisms
PHYSICAL REVIEW E 71 (4): Art. No. 041914 Part 1 APR 2005
Shakhnovich, BE; Deeds, E; Delisi, C; Shakhnovich, E
Protein
structure and evolutionary history determine sequence space topology
GENOME RESEARCH 15 (3): 385-392 MAR 2005
Deeds, EJ; Hennessey, H; Shakhnovich, EI
Prokaryotic phylogenies inferred from protein structural domains
GENOME RESEARCH, 15 (3): 393-402 MAR 2005
Brumer Y, Shakhnovich EI
Importance
of DNA repair in tumor suppression
PHYSICAL REVIEW E 70 (6): Art. No. 061912 Part 1 DEC 2004
Tannenbaum E, Sherley JL, Shakhnovich EI
Imperfect
DNA lesion repair in the semiconservative quasispecies model:
Derivation of the Hamming class equations and solution of the
single-fitness peak landscape
PHYSICAL REVIEW E 70 (6): Art. No. 061915 Part 1 DEC 2004
Nivon LG, Shakhnovich EI
All-atom
Monte Carlo simulation of GCAA RNA folding
JOURNAL OF MOLECULAR BIOLOGY 344 (1): 29-45 NOV 12 2004
Dominy BN, Shakhnovich E
Native
atom types for knowledge-based potentials: Application to binding
energy prediction.
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 228: U504-U504 021-COMP
Part 1 AUG 22 2004
Geissler PL, Shakhnovich EI, Grosberg AY
Solvation
versus freezing in a heteropolymer globule
PHYSICAL REVIEW E 70 (2): Art. No. 021802 Part 1 AUG 2004
Tannenbaum E, Shakhnovich EI
Solution
of the quasispecies model for an arbitrary gene network
PHYSICAL REVIEW E 70 (2): Art. No. 021903 Part 1 AUG 2004
Dominy BN, Shakhnovich EI
Native
atom types for knowledge-based potentials: Application to binding
energy prediction
JOURNAL OF MEDICINAL CHEMISTRY 47 (18): 4538-4558 AUG 26 2004
Tiana G, Dokholyan NV, Broglia RA, Shakhnovich EI
The
evolution dynamics of model proteins
JOURNAL OF CHEMICAL PHYSICS 121 (5): 2381-2389 AUG 1 2004
Brumer Y, Shakhnovich EI
Host-parasite
coevolution and optimal mutation rates for semiconservative quasispecies
PHYSICAL REVIEW E 69 (6): Art. No. 061909 Part 1 JUN 2004
Liu ZJ, Dominy BN, Shakhnovich EI
Structural mining: Self-consistent design on flexible protein-peptide
docking and transferable binding affinity potential
JOURNAL
OF THE AMERICAN CHEMICAL SOCIETY 126 (27): 8515-8528 JUL 14 2004
Tannenbaum E, Deeds EJ, Shakhnovich EI
Semiconservative
replication in the quasispecies model
PHYSICAL REVIEW E 69
(6): Art. No. 061916 Part 1 JUN 2004
Hubner IA, Oliveberg M, Shakhnovich EI
Simulation, experiment, and evolution: Understanding nucleation
in protein S6 folding
PROCEEDINGS OF THE NATIONAL ACADEMY
OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (22): 8354-8359 JUN
1 2004
Tiana G, Shakhnovich BE, Dokholyan NV, Shakhnovich EI
Imprint
of evolution on protein structures
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES
OF AMERICA 101 (9): 2846-2851 MAR 2 2004
Deeds EJ, Shakhnovich B, Shakhnovich EI
Proteomic traces of speciation
JOURNAL OF MOLECULAR BIOLOGY 336
(3): 695-706 FEB 20 2004
Hubner IA, Shimada J, Shakhnovich EI
Commitment and nucleation in the protein G transition state
JOURNAL OF MOLECULAR BIOLOGY 336 (3): 745-761 FEB 20 2004
Dokholyan NV, Borreguero JM, Buldyrev SV, Ding F, Stanley HE, Shakhnovich
EI
Identifying
importance of amino acids for protein folding from crystal structures
METHODS IN ENZYMOLOGY 374: 616+ 2003
Morrissey MP, Ahmed Z, Shakhnovich EI
The
role of cotranslation in protein folding: a lattice model study
POLYMER 45 (2): 557-571 JAN 15 2004
Tannenbaum E, Shakhnovich EI
Error
and repair catastrophes: A two-dimensional phase diagram in the
quasispecies model
PHYSICAL REVIEW E 69 (1): Art. No. 011902 Part 1 JAN 2004
Morrissey MP, Ahmed Z, Shakhnovich EI,
The
role of cotranslation in protein folding: a lattice model study,
POLYMER 45 (2): 557-571 JAN 15 2004
Deeds EJ, Dokholyan NV, Shakhnovich EI,
Protein
evolution within a structural space, BIOPHYS J 85 (5): 2962-2972
NOV 1 2003
Pei JM, Dokholyan NV, Shakhnovich EI, Grishin NV,
Using
protein design for homology detection and active site searches,
P NATL ACAD SCI USA 100 (20): 11361-11366 SEP 30 2003
Tannenbaum E, Deeds EJ, Shakhnovich EI,
Equilibrium
distribution of mutators in the single fitness peak model,
PHYS REV LETT 91 (13): Art. No. 138105 SEP 26 2003
Shakhnovich BE, Harvey JM, Comeau S, Lorenz D, DeLisi C, Shakhnovich
E,
ELISA:
Structure-function inferences based on statistically significant
and evolutionarily inspired observations, BMC BIOINFORMATICS
4: Art. No. 34 SEP 2 2003
England JL, Shakhnovich BE, Shakhnovich EI,
Selection of
more designable folds: A mechanism for thermophilic adaptation
P NATL ACAD SCI USA 100 (15): 8727-8731 JUL 22 2003
Kussell E, Shimada J, Shakhnovich EI
Side-chain Dynamics
and Protein Folding
PROTEINS 52 (1): 303-321 AUG 1 2003
Chen W, Mirny L, Shakhnovich EI
Fold
recognition with minimal gaps
PROTEINS 51 (4): 531-543 AUG 1 2003
England JL, Shakhnovich EI
Structural
determinant of protein designability
PHYS REV LETT 90 (21): art. no. 218101 MAY 30 2003
Li LW, Shakhnovich EI, Mirny LA
Amino
acids determining enzyme-substrate specificity in prokaryotic
and eukaryotic protein kinases
P NATL ACAD SCI USA 100 (8): 4463-4468 APR 15 2003
Shakhnovich BE, Dokholyan NV, DeLisi C, Shakhnovich EI
Functional
fingerprints of folds: Evidence for correlated structure-function
evolution
J MOL BIOL 326 (1): 1-9 FEB 7 2003
Ding F, Dokholyan NV, Buldyrev SV, et al.
Direct
molecular dynamics observation of protein folding transition
state ensemble
BIOPHYS J 83 (6): 3525-3532 DEC 2002
Ding F, Dokholyan NV, Buldyrev SV, et al.
Molecular
dynamics simulation of the SH3 domain aggregation suggests a
generic amyloidogenesis mechanism
J MOL BIOL 324 (4): 851-857 DEC 6 2002
Dokholyan NV, Mirny LA, Shakhnovich EI
Understanding
conserved amino acids in proteins
PHYSICA A 314 (1-4): 600-606 NOV 1 2002
Dokholyan NV, Shakhnovich B, Shakhnovich EI
Expanding
protein universe and its origin from the biological Big Bang
P NATL ACAD SCI USA 99 (22): 14132-14136 OCT 29 2002
Mukamel EA, Shakhnovich EI
Phase
diagram for unzipping DNA with long-range interactions
PHYS REV E 66 (3): art. no. 032901 Part 1 SEP 2002
Kussell E, Shakhnovich EI
Glassy
dynamics of side-chain ordering in a simple model of protein
folding
PHYS REV LETT 89 (16): art. no. 168101 OCT 14 2002
Shimada J, Shakhnovich EI
The
ensemble folding kinetics of protein G from an all-atom Monte
Carlo simulation
P NATL ACAD SCI USA 99 (17): 11175-11180 AUG 20 2002
Geissler PL, Shakhnovich EI
Reversible
stretching of random heteropolymers
PHYS REV E 65 (5): art. no. 056110 Part 2 MAY 2002
Dokholyan NV, Li L, Ding F, Shakhnovich EI.
Topological
determinants of protein folding
P NATL ACAD SCI USA 99 (13): 8637-8641 JUN 25 2002
Ishchenko AV, Shakhnovich EI
SMall
molecule growth 2001 (SMoG2001): An improved knowledge-based
scoring function for protein-ligand interactions
J MED CHEM 45 (13): 2770-2780 JUN 20 2002
Grzybowski BA, Ishchenko AV, Shimada J, Shakhnovich EI
From
knowledge-based potentials to combinatorial lead design in silico
ACCOUNTS CHEM RES 35 (5): 261-269 MAY 2002
Geissler PL, Shakhnovich EI
Mechanical
response of random heteropolymers
MACROMOLECULES 35 (11): 4429-4436 MAY 21 2002
Borreguero JM, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich
EI
Thermodynamics
and folding kinetics analysis of the SH3 domain from discrete
molecular dynamics
J MOL BIOL 318 (3): 863-876 MAY 3 2002
Kussell E, Shimada J, Shakhnovich EI
A
structure-based method for derivation of all-atom potentials
for protein folding
P NATL ACAD SCI USA 99 (8): 5343-5348 APR 16 2002
Grzybowski BA, Ishchenko AV, Kim CY, Topalov G, Chapman R, Christianson
DW, Whitesides GW, Shakhnovich EI
Combinatorial
computational method gives new picomolar ligands for a known
enzyme
P NATL ACAD SCI USA 99 (3): 1270-1273 FEB 5 2002
Gutman L, Shakhnovich E
Field
theory and segmental alignment analysis for a solution of sequence
disordered liquid crystalline polymers
J CHEM PHYS 116 (7): 3134-3140 FEB 15 2002
Tiana G, Broglia RA, Shakhnovich EI
Energy
profile of the space of model protein sequences
J BIOL PHYS 27 (2): 147-159 2001
Li L, Shakhnovich EI
Constructing,
verifying, and dissecting the folding transition state of chymotrypsin
inhibitor 2 with all-atom simulations
P NATL ACAD SCI USA 98 (23): 13014-13018 NOV 6 2001
Angerman HJ, Shakhnovich E
Dynamic
charge-density correlation function in weakly charged polyampholyte
globules
PHYS REV E 64 (4): art. no. 041802 Part 1 OCT 2001
Dokholyan NV, Shakhnovich EI
Understanding
hierarchical protein evolution from first principles
J MOL BIOL 312 (1): 289-307 SEP 7 2001
Kussell E, Shimada J, Shakhnovich EI
Excluded
volume in protein side-chain packing
J MOL BIOL 311 (1): 183-193 AUG 3 2001
Berriz GF, Shakhnovich EI
Characterization
of the folding kinetics of a three-helix bundle protein via a
minimalist Langevin model
J MOL BIOL 310 (3): 673-685 JUL 13 2001
Mirny L, Shakhnovich E
Protein
folding theory: From lattice to all-atom models
ANNU REV BIOPH BIOM 30: 361-396 2001
Gutman L, Shakhnovich E
Exotic
phase transitions in disordered globular networks
J CHEM PHYS 114 (24): 10968-10976 JUN 22 2001
Mirny L, Shakhnovich E
Evolutionary
conservation of the folding nucleus
J MOL BIOL 308 (2): 123-129 APR 27 2001
Shimada J, Kussell EL, Shakhnovich EI
The
folding thermodynamics and kinetics of crambin using an all-atom
Monte Carlo simulation
J MOL BIOL 308 (1): 79-95 APR 20 2001
Pitard E, Shakhnovich EI
Mode-coupling
theory for heteropolymers
PHYS REV E 63 (4): art. no. 041501 Part 1 APR 2001
Li L, Shakhnovich EI
Different
circular permutations produced different folding nuclei in proteins:
A computational study
J MOL BIOL 306 (1): 121-132 FEB 9 2001
Shakhnovich EI, Shimada J, Kussell E
Folding
thermodynamics and kinetics: Insights from all-atom simulations.
ABSTR PAP AM CHEM S 220: 82-PHYS Part 2 AUG 20 2000
Choe SE, Li LW, Matsudaira PT, Wagner G, Shakhnovich EI
Differential
stabilization of two hydrophobic cores in the transition state
of the villin 14T folding reaction
J MOL BIOL 304 (1): 99-115 NOV 17 2000
Wilder J, Shakhnovich EI
Proteins
with selected sequences: A heteropolymeric study
PHYS REV E 62 (5): 7100-7110 Part B NOV 2000
Vendruscolo M, Mirny LA, Shakhnovich EI, Domany E.
Comparison
of two optimization methods to derive energy parameters for protein
folding: Perceptron and Z score
PROTEINS 41 (2): 192-201 NOV 1 2000
Mirny LA, Finkelstein AV, Shakhnovich EI
Statistical
significance of protein structure prediction by threading
P NATL ACAD SCI USA 97 (18): 9978-9983 AUG 29 2000
Grzybowski BA, Ishchenko AV, DeWitte RS, Whitesides GW, Shakhnovich
EI.
Development
of a knowledge-based potential for crystals of small organic
molecules: Calculation of energy surfaces for C=0 center dot
center dot center dot H-N hydrogen bonds
J PHYS CHEM B 104 (31): 7293-7298 AUG 10 2000
Abkevich VI, Shakhnovich EI
What
can disulfide bonds tell us about protein energetics, function
and folding: Simulations and bioninformatics analysis
J MOL BIOL 300 (4): 975-985 JUL 21 2000
Gutman L, Shakhnovich E
Orientational
ordering in sequence-disordered liquid crystalline polymers
CHEM PHYS LETT 325 (4): 323-329 JUL 28 2000
Tiana G, Broglia RA, Shakhnovich EI
Hiking
in the energy landscape in sequence space: A bumpy road to good
folders
PROTEINS 39 (3): 244-251 MAY 15 2000
Shimada J, Ishchenko AV, Shakhnovich EI
Analysis
of knowledge-based protein-ligand potentials using a self-consistent
method
PROTEIN SCI 9 (4): 765-775 APR 2000
Li L, Mirny LA, Shakhnovich EI
Kinetics,
thermodynamics and evolution of non-native interactions in a
protein folding nucleus
NAT STRUCT BIOL 7 (4): 336-342 APR 2000
Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI.
Identifying
the protein folding nucleus using molecular dynamics
J MOL BIOL 296 (5): 1183-1188 MAR 10 2000
Grzybowski BA, Anderson JR, Colton I, Shakhnovich EI, Whitesides
GW
Modeling
the kinetics of acylation of insulin using a recursive method
for solving the systems of coupled differential equations
BIOPHYS J 78 (2): 652-661 FEB 2000
Shakhnovich EI, Mirny L
Protein
folding: From lattice models to real proteins.
BIOPHYS J 78 (1): 761SYMP Part 2 JAN 2000
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